bio-loggerの被依存関係 以下のgemの最新版はbio-loggerを必要としています
bio-blastxmlparser 2.0.4
Fast big data BLAST XML parser and library; this libxml2 based version is 50x faster th...
55,848 ダウンロード数
bio-maf 1.0.1
Multiple Alignment Format parser for BioRuby.
55,297 ダウンロード数
bio-gff3 0.9.1
GFF3 (genome browser) information and digest mRNA and CDS sequences. Options for low me...
47,989 ダウンロード数
bio-table 1.0.0
Functions and tools for tranforming and changing tab delimited and comma separated tabl...
37,368 ダウンロード数
bio-velvet 0.6.0
Parser to work with some file formats used in the velvet DNA assembler
28,165 ダウンロード数
bio-bigbio 0.1.6
Fasta reader, ORF emitter, sequence translation
27,233 ダウンロード数
bio-signalp 0.3.1
A wrapper for the signal peptide prediction algorith SignalP. Not very well supported, ...
26,365 ダウンロード数
bio-commandeer 0.4.0
A dead simple method of running shell commands from within Ruby, by applying opinion
26,174 ダウンロード数
bio-kmer_counter 0.1.2
A biogem for counting small kmers for fingerprinting nucleotide sequences. See README f...
25,623 ダウンロード数
finishm 0.0.9
De-novo assemblies generally only provide draft genomes. FinishM is aimed at improving ...
22,279 ダウンロード数
divvy_proteomics 0.3.3
divvy up spectra from DTASelect files in a somewhat parsimonious way
20,499 ダウンロード数
bio-velvet_underground 0.3.1
Bindings to some internals of the velvet assembler.
20,058 ダウンロード数
dirseq 0.4.3
FPKG (gene expression metric) calculator for metatranscriptomics
18,017 ダウンロード数
bio-pileup_iterator 0.0.4
Iterate through a samtools pileup file
14,812 ダウンロード数
bio-rdf 0.0.2
Store relationships in a triple-store, such as gene enrichment and QTL, and use this in...
13,519 ダウンロード数
bio-sra 0.3.1
A Sequence Read Archive (SRA) download script and Ruby interface to the SRAdb (SRA meta...
12,669 ダウンロード数
SilkSlider 0.2.2
Predict silk-like proteins from its amino acid sequence.
11,766 ダウンロード数
bio-core 0.0.1
Bioruby core plugins
10,431 ダウンロード数
bio-gag 0.1.0
bio-gag is a biogem for detecting and correcting a particular type of error that occurs...
9,640 ダウンロード数
bio-hmmer3_report 0.1.0
Enables programmatic parsing of HMMER version 3 reports
8,894 ダウンロード数
bio-express_beta_diversity 0.1.0
Interface for express beta diversity file formats
8,187 ダウンロード数
bio-primer3 0.0.1.pre
Primer3-related Ruby code - wrappers, Boulder IO, etc.
2,858 ダウンロード数