bioの被依存関係 以下のgemの最新版はbioを必要としています
rbbt-sources 3.4.2
Data sources like PubMed, Entrez Gene, or Gene Ontology
251,170 ダウンロード数
mspire 0.10.8.0
mass spectrometry proteomics, lipidomics, and tools, a rewrite of mspire, merging of ms...
239,346 ダウンロード数
snp-search 2.12.0
Use the snp-search tool to create, import, manipulate and query your SNP database
135,630 ダウンロード数
bio-samtools 2.6.2
Binder of samtools for ruby, on the top of FFI. This project was born from the need...
130,243 ダウンロード数
bio-polyploid-tools 1.2.1
Repository of tools developed at Crop Genetics in JIC to work with polyploid wheat
127,155 ダウンロード数
bacterial-annotator 1.0.1
GEM to annotate bacterial genome sequence based on a reference genome and complete the ...
112,335 ダウンロード数
protk 1.4.4
Commandline tools for proteomics
104,257 ダウンロード数
parse_fasta 2.5.2
Provides nice, programmatic access to fasta and fastq files, as well as providing Seque...
92,592 ダウンロード数
bio-gadget 0.5.0
Gadgets for bioinformatics
87,838 ダウンロード数
iroki 0.0.36
Command line app and library code for Iroki, a phylogenetic tree customization program.
85,483 ダウンロード数
transrate 1.0.1
a library and command-line tool for quality assessment of de-novo transcriptome assemblies
83,908 ダウンロード数
bio-ucsc-api 0.6.5
Ruby UCSC API: accessing the UCSC Genome Database using Ruby
80,238 ダウンロード数
bio-svgenes 0.4.1
This bio-gem facilitates the creation of pretty, publication quality SVG images from fe...
64,366 ダウンロード数
ms-core 0.0.19
basic, shared functionality for mspire libraries.
59,499 ダウンロード数
biointerchange 1.0.8
BioInterchange is a Ruby gem, command-line tool, web-service for turning heterogeneous ...
50,913 ダウンロード数
crb-blast 0.6.9
See summary
50,761 ダウンロード数
wrnap 1.2.2
A comprehensive wrapper w(RNA)pper for various RNA CLI programs.
49,042 ダウンロード数
bio-gff3 0.9.1
GFF3 (genome browser) information and digest mRNA and CDS sequences. Options for low me...
47,970 ダウンロード数
full_lengther_next 1.0.6
FULL-LENGTHERNEXT is a tool adapted to NGS technologies, able to work in parallel and i...
45,488 ダウンロード数
bio-basespace-sdk 0.1.7
BaseSpace Ruby SDK is a Ruby based Software Development Kit to be used in the developme...
44,189 ダウンロード数
genevalidatorapp 2.1.8
A Web App wrapper for GeneValidator, a program for validating gene predictions.
41,551 ダウンロード数
bio-band 0.1.11
Data mining and machine learning algorithms for JRuby
41,509 ダウンロード数
rbfam 12.0.1.1
Light wrapper for RFam data in Ruby.
41,143 ダウンロード数
genevalidator 2.1.5
The tool validates the input predicted genes and provides useful information (length va...
40,403 ダウンロード数
fasta_util 0.5.2
Easy fasta filtering, wrapping, calculating common statistics, sorting etc. Based on th...
39,212 ダウンロード数
bio-publisci 0.1.0
A toolkit for publishing scientific results and datasets using RDF, OWL, and related te...
34,797 ダウンロード数
ulla 0.9.9.2
'ulla' is a program for calculating environment-specific substitution tables from user ...
33,811 ダウンロード数
bio-ngs 0.5.2
bio-ngs provides a framework for handling NGS data with BioRuby
32,646 ダウンロード数
bio-faster 0.4.5
A fast parser for FastQ files
32,117 ダウンロード数
sciruby-full 0.2.11
Scientific gems for Ruby. This is the full installation with rigid version constraints.
29,735 ダウンロード数